StACKER Python Modules

StACKER Python Modules#

StACKER functions are accessible through modules, but all functions are available through import stacker.

stacker

The Python Functions that control Command Line Options

stacker.file_manipulation

Filter Trajectory Files

stacker.pairwise_distance

Create and Analyze System Stacking Fingerprints (SSFs)

stacker.residue_movement

Create and Analyze Pairwise Stacking Fingerprints (PSFs)

stacker.visualization

Visualize the SSFs, PSFs, and other analyses

stacker.kmeans

Run K Means Clustering and Principal Component Analysis

stacker.vector

Vector class used for SSF and PSF Calculation